Atmosphere-Ocean Dynamics Group

Department of Applied Mathematics and Theoretical Physics

Publications (2000–2012)

2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1990-1999 | 1970-1989


Boland, E. J. D., A. F. Thompson, E. Shuckburgh, P. H. Haynes, 2012: The Formation of Nonzonal Jets over Sloped Topography. J. Phys. Oceanogr., 42, 1635–1651.


Flannaghan, T. J., and S. Fueglistaler, 2011: Kelvin waves and shear-flow turbulent mixing in the TTL in (re-)analysis data. Geophys. Res. Lett., 38, L02801.

Wright, J. S., R. Fu, S. Fueglistaler, Y. Liu, and Y. Zhang, 2011: The influence of summertime convection over South-East Asia on water vapor in the tropical stratosphere, J. Geophys. Res., 116, D12302.

Cooper, F. C., and P. H. Haynes, 2011: Climate Sensitivity via a Nonparametric Fluctuation-Dissipation Theorem, J. Atmos. Sci., 68, 937–953.

Ploeger, F., S. Fueglistaler, J.-U. Grooß, G. Günther, P. Konopka, Y. S. Liu, R. Müller, F. Ravegnani, C. Schiller, A. Ulanovski, and M. Riese, 2011: Insight from ozone and water vapour on transport in the tropical tropopause layer (TTL), Atm. Chem. Phys., 11, 407–419.

Taylor, J. R., and R. Ferrari, 2011: Ocean fronts trigger high latitude phytoplankton blooms, Geophys. Res. Lett., 38, L23601, doi:10.1029/2011GL049312.

Taylor, J. R., and R. Ferrari, 2011: Shutdown of turbulent convection as a new criterion for the onset of spring phytoplankton blooms, Limnology and Oceanography, 56(6), 2293–2307.


Hughes, C. W., A. F. Thompson, and C. Wilson, 2010: Identification of jets and mixing barriers from sea level and vorticity measurements using simple statistics, Ocean Modelling, 32, 44–57.

Liu, Y. S., S. Fueglistaler, and P.H. Haynes, 2010: The advection-condensation paradigm for stratospheric water vapour, J. Geophys. Res., 115, doi:10.1029/2010JD014352.

Steinwagner, J., S. Fueglistaler, G. Stiller, et al., 2010: Tropical dehydration processes constrained by the seasonality of stratospheric deuterated water, Nature Geosc., 3, 262–266.

Thompson, A.F., 2010: Jet formation and evolution in baroclinic turbulence with simple topography, J. Phys. Oceanogr., 40, 257-278.

Thompson, A.F., P.H. Haynes, C. Wilson & K.J. Richards, 2010: Rapid Southern Ocean front transitions in an eddy-resolving ocean GCM, Geophys. Res. Lett., 37, doi:10.1029/2010GL045386.

Tzella, A. and P. H. Haynes, 2010: Smooth and filamental structures in chaotically advected chemical fields, Phys. Rev. E, 81, doi:10.1103/PhysRevE.81.016322.

Wood, R. B. and M.E. McIntyre, 2010: A general theorem on angular–momentum changes due to potential vorticity mixing and on potential–energy changes due to buoyancy mixing, J. Atmos. Sci., 67, 1261–1274.

Wright, J. S., A. H. Sobel, and J. Galewsky 2010: Diagnosis of relative humidity changes in a warmer climate using tracers of last saturation, J. Clim., 23, 4556–4570.


Fueglistaler, S., A. E. Dessler, T. J. Dunkerton, I. Folkins, Q. Fu, and P. W. Mote, 2009: Tropical tropopause layer, Rev. Geophys., 47, doi:10.1029/2008RG000267.

Thompson, A.F., K.J. Heywood, S.E. Thorpe, A.H.H. Renner, A. Trasvina-Castro, 2009: Surface circulation at the tip of the Antarctic Peninsula from drifters, J. Phys. Oceanogr., 39, 3-26.

Tzella, A. and P. H. Haynes, 2009: The role of a delay time on the spatial structure of chaotically advected reactive scalars, Phys. Fluids, 21, doi:10.1063/1.3210778.


Dessler, A. E., T. F. Hanisco, and S. Fueglistaler, 2008: Effects of convective ice lofting on H2O and HDO in the tropical tropopause layer, J. Geophy. Res., 112, D18309, doi:10.1029/2007JD008609.

Dritschel, D. G. and M. E. McIntyre, 2008: Multiple jets as PV staircases: the Phillips effect and the resilience of eddy–transport barriers, J. Atmos. Sci., 65, 855–874.

Folkins I., S. Fueglistaler, G. Lesins, and T. Mitovski, 2008: A low–level circulation in the tropics, J. Atmos. Sci., 65, 1019–1034.

Hardiman, S. C. and P. H. Haynes, 2008: Dynamical sensitivity of the stratospheric circulation and downward influence of upper level perturbations, J. Geophys. Res., 113, D23103, doi:10.1029/2008JD010168.

McIntyre, M. E., 2008: Potential–vorticity inversion and the wave–turbulence jigsaw: some recent clarifications, Adv. Geosci., 15, 47–56.

Scherer M., H. Vömel, S. Fueglistaler, S. J. Oltmans, and J. Staehelin, 2008: Trends and variability of midlatitude stratospheric water vapour deduced from the re–evaluated Boulder balloon series and HALOE, Atmo. Chem. Phys., 8, 1391–1402.

Thompson, A.F., 2008: The atmospheric ocean: eddies and jets in the Antarctic Circumpolar Current, Phil. Trans. R. Soc. A, 366, 4529-4541.


Baldwin, M. P., P. B. Rhines, H.–P. Huang, and M. E. McIntyre, 2007: The jet–stream conundrum, Science, 315 467–468.

Hardiman S. C., N. Butchart, P. H. Haynes, and S. H. E. Hare, 2007: A note on forced versus internal variability of the stratosphere, Geophys. Res. Lett., 34, L12803, doi:10.1029/2007GL029726.

Haynes, P. H., D. A. Poet, and E. F. Shuckburgh, 2007: Transport and mixing in kinematic and dynamically consistent flows, J. Atmos. Sci., 64, 3640–3651.

McIntyre, M. E., 2007: On thinking probabilistically, Proc. 15th 'Aha Huliko'a Workshop, 153–161.

Mohebalhojeh, A. R. and M. E. McIntyre, 2007: Local mass conservation and velocity splitting in PV–based balanced models. Part I: The hyperbalance equations, J. Atmos. Sci., 64, 1782–1793.

Mohebalhojeh, A. R. and M. E. McIntyre, 2007: Local mass conservation and velocity splitting in PV–based balanced models. Part II: Numerical results, J. Atmos. Sci., 64, 1794–1810.

Salman, H. and P. H. Haynes, 2007: A numerical study of passive scalar evolution in peripheral regions, Phys. Fluids, 19, doi:10.1063/1.2736341.

Tzella, A. and P. H. Haynes, 2007: Small–scale spatial structure in plankton distributions, Biogeosciences, 4, pp 173–179.


Hampson, J., and P. Haynes, 2006: Influence of the equatorial QBO on the extratropical stratosphere, J. Atmos. Sci., 63, 936–951.

Marshall, J., E. Shuckburgh, H. Jones, and C. Hill, 2006: Estimates and implications of surface eddy diffusivity in the southern ocean derived from tracer transport, J. Phys. Oceanogr., 36, 1806–1821.

Rudge, J. F., 2006: Mantle pseudo–isochrons revisited, Earth Planet. Sci. Lett., 249, 494–513. doi:10.1016/j.epsl.2006.06.046.


Bühler, O. and M. E. McIntyre, 2005: Wave capture and wave–vortex duality, J. Fluid Mech, 534, 67–95.

Fueglistaler, S., M. Bonazzola, P. H. Haynes, and T. Peter, 2005: Stratospheric water vapor predicted from the Lagrangian temperature history of air entering the stratosphere in the tropics, J. Geophys. Res., 110, D10S16, doi:10.1029/2004JD005516.

Fueglistaler S. and P. H. Haynes 2005: Control of interannual and longer–term variability of stratospheric water vapor, J. Geophys. Res., 110, D24108, doi:10.1029/2005JD006019.

Haynes, P. H. and J. Vanneste, 2005: What controls the decay of passive scalars in smooth flows?, Phys. Fluids, 17, doi:10.1063/1.2033908.

Haynes, P. H., 2005: Transport and mixing in the atmosphere, Proceedings of 21st ICTAM Congress, August 15–21 2004, Warsaw, Dordrecht, Kluwer Academic Publishers.

Haynes, P. H., 2005: Stratospheric dynamics, Ann. Rev. Fluid Mech., 37, 263–293.

Roscoe, H. K., G. D. Carver, and P. H. Haynes, 2005: The 2002 split ozone hole – the wave of the century? Weather, 60, 15–18.

Rudge, J. F., D. McKenzie, and P. H. Haynes, 2005: A theoretical approach to understanding the isotopic heterogeneity of mid–ocean ridge basalt, Geochim. Cosmochim. Acta, 69, 3873–3887.

Warner, C. D., A. A. Scaife, and N. Butchart, 2005: Filtering of Parameterized Nonorographic Gravity Waves in the Met Office Unified Model, J. Atmos. Sci., 62, 1831–1848.


Bonazzola, M. and P. H.Haynes, 2004: A trajectory–based study of the tropical tropopause region, J. Geophys. Res., 109, D20112, doi:10.1029/2003JD004356.

Fereday, D. R. and P. H. Haynes, 2004: Scalar decay in two–dimensional chaotic advection and Batchelor–regime turbulence, Phys. Fluids., 16, 4359–4370.

Hampson, J. E. and P. H. Haynes, 2004: Phase alignment of the tropical stratospheric QBO in the annual cycle, J. Atmos. Sci., 21, 2627–2637.

Haynes, P. H. and J. Vanneste, 2004: Stratospheric tracer spectra, J. Atmos. Sci., 61, 161–178.

Schekochihin, A. A., P. H. Haynes, and S. C. Cowley, 2004: Diffusion of passive scalar in a finite–scale random flow, Phys. Rev. E., 70, 046304.


Baldwin, M. P., D. W. J. Thompson, E. F. Shuckburgh, W. A. Norton, and N. P. Gillett, 2003: Weather from the Stratosphere?, Science, 301, 317–319.

Bühler, O. and M. E. McIntyre 2003: Remote recoil: a new wave–mean interaction effect, J. Fluid Mech, 492, 207–230.

Esler, J. G., P. H. Haynes, K. S. Law, H. Barjat, K. Dewey, J. Kent, S. Schmitgen and N. Brough, 2003: Transport and mixing between airmasses in cold frontal zones during Dynamics and Chemistry of Frontal Zones (DCFZ), J. Geophys. Res., 108, D4, doi:10.1029/2001JD001494.

Griffiths, S. D., 2003: The nonlinear evolution of zonally symmetric equatorial inertial instability, J. Fluid Mech., 474, 245–273.

Griffiths, S. D., 2003: Nonlinear vertical scale selection in equatorial inertial instability, J. Atmos. Sci., 60, 977–990.

McIntyre, M. E., 2003: Solar tachocline dynamics: eddy viscosity, anti–friction, or something in between?, In: Stellar Astrophysical Fluid Dynamics (chapter 8), ed. M. J. Thompson, J. Christensen–Dalsgaard; Cambridge University Press (416 pp), 111–130.

McIntyre, M. E., 2003: On global–scale atmospheric circulations. In: Perspectives in Fluid Dynamics: A Collective Introduction to Current Research, ed. G.K. Batchelor, H.K. Moffatt, M.G. Worster; Cambridge University Press (631pp.), 557–624.

McIntyre, M. E., 2003: Wind–generated water waves: two overlooked mechanisms? In: Wind over waves: Forecasting and fundamentals of applications, ed. S. G. Sajjadi and J. C. R. Hunt., Horwood Publishing (Chichester, UK) and Inst. Maths. Applics. (Southend–on–Sea, UK), 232pp, 105–118.

Shuckburgh, E. F. and P. H. Haynes, 2003: Diagnosing transport and mixing using a tracer–based coordinate system, Phys. Fluids, 15, 3342–3357.

Shuckburgh, E. F., R. K. Scott, J. P. Cammas, and B. J. Legras, 2003: Stretching rates and equivalent length near the tropopause, J. Geophys. Res., 108, doi:10.1029/2002JD002988.


Fereday, D. R., P. H. Haynes, A. Wonhas, and J. C. Vassilicos, 2002: Scalar variance decay in chaotic advection and Batchelor–regime turbulence, Phys. Rev. E, 65, 035301(R).

Haynes, P. H., 2002: 'Critical Layers' and 'Turbulence and Mixing', In: Encyclopedia of Atmospheric Sciences, ed. J.R. Holton, J.A. Pyle, J.A. Curry, Academic Press.

Hertzog, A., C. Souprayen, and A. Hauchecorne, 2002: Eikonal simulations for the formation and the maintenance of atmospheric gravity wave spectra, J. Geophys. Res., 107, 4145–4159.

McIntyre, M. E., 2002: 'Balanced Flow' and 'Potential Vorticity', In: Encyclopedia of Atmospheric Sciences, ed. J. R. Holton, J. A. Pyle, and J. A. Curry, Academic Press, 2, 680–685 and 685–694.

McIntyre, M. E. and I. Roulstone, 2002: Are there higher–accuracy analogues of semigeostrophic theory?, In: Large–scale Atmosphere–Ocean Dynamics: II: Geometric Methods and Models, ed. I. Roulstone, J. Norbury. Cambridge University Press.

Neufeld, Z., P. H. Haynes, V. G. Garçon, and J. Sudre, 2002: Ocean fertilization experiments may initiate a large–scale plankton bloom, Geophys. Res. Lett., 1534, doi:10.1029/2001GL013677.

Neufeld, Z., P. H. Haynes, and T. Tel, 2002: Chaotic mixing induced transitions in reaction–diffusion systems, Chaos, 12, 426–438.

Scott, R. K., and P. H. Haynes, 2002: The seasonal cycle of planetary waves in the winter stratosphere, J. Atmos. Sci., 59, 803–822.


Baldwin, M. P., L. J. Gray, T. J. Dunkerton, K. Hamilton, P. H. Haynes, W. J. Randel, J. R. Holton, M. J. Alexander, I. Hirota, T. Horinuchi, D. B. A. Jones, J. S. Kinnersley, C. Marquadt, K. Sato, and M. Takahashi, 2001: The quasi–biennial oscillation, Rev. Geophys., 39, 179–229.

Bouruet–Aubertot, P., C. Koudella, C. Staquet, and K. B. Winters, 2001: Particle dispersion and mixing induced by breaking internal gravity waves, Dyn. Atmos. Oceans, 33, 95–134.

Esler, J. G., D. G. H. Tan, P. H. Haynes, M. J. Evans, K. S. Law, P.–H. Plantevin and J. A. Pyle: Stratosphere–troposphere exchange: Chemical sensitivity to mixing, J. Geophys. Res., 106, 4717–4731.

Haynes, P. H., J. F. Scinocca, and M. D. Greenslade, 2001: Formation and maintenance of the extratropical tropopause by baroclinic eddies, Geophys. Res. Lett., 28, 4179–4182.

Haynes, P. H., 2001: Vertical shear as a route to mixing, In: Proceedings of the 12th 'Aha Huliko'a Hawaiian Winter Workshop, eds. C.J.R. Garrett, P. Muller.

Lee, A. M., H. K. Roscoe, A. E. Jones, P. H. Haynes, E. F. Shuckburgh, M. W. Morrey and H. C. Pumphrey, 2001: The impact of the mixing properties within the Antarctic stratospheric vortex on ozone loss in spring, J. Geophys. Res., 106, 3203–3211.

Lévêque, E. and C. R. Koudella, 2001: Finite–mode spectral model of homogeneous and isotropic Navier–Stokes turbulence: A rapidly depleted energy cascade, Phys. Rev. Lett., 86, 4033–4036.

Lopez, C., Z. Neufeld, E. Hernandez–Garcia, and P. H. Haynes, 2001: Chaotic advection of reacting substances: Plankton dynamics on a meandering jet, Phys. Chem. Earth Pt. B, 26, 313–317.

McIntyre, M. E. and W. A. Norton, 2001: Corrigendum, J. Atmos. Sci., 58, 949.

McIntyre, M. E., 2001: Balance, potential–vorticity inversion, Lighthill radiation, and the slow quasimanifold. In: IUTAM Symposium on Advances in Mathematical Modelling of Atmosphere and Ocean Dynamics, ed. P. F. Hodnett, Dordrecht, Kluwer Academic Publishers, 45–68.

Neufeld, Z., 2001: Excitable media in a chaotic flow, Phys. Rev. Lett., 87, 108301

Satoh, M. and Z. Neufeld, 2001: The gradient of potential vorticity in the mid–latitudes of the troposphere, Geophys. Res. Lett., 28, 163–166.

Shuckburgh, E. F., W. A. Norton, A. Iwi and P. H. Haynes, 2001: The influence of the quasi–biennial oscillation on isentropic transport and mixing in the tropics and subtropics, J. Geophys. Res., 106, 14327–14338.

Souprayen, C., J. Vanneste, A. Hertzog, and A. Hauchecorne, 2001: Atmospheric gravity wave spectra: A stochastic approach, J. Geophys. Res., 106, 24071–24086.

Warner, C. D. and M. E. McIntyre, 2001: An ultrasimple spectral parameterization for nonorographic gravity waves, J. Atmos. Sci.: 58, 1837–1857.


Alisse, J.–R., P. H. Haynes, J. Vanneste, and C. Sidi, 2000: Quantification of stratospheric mixing from turbulence microstructure measurements, Geophys. Res. Lett., 27, 2621–2624.

Esler, J. G., L. M. Polvani and R. A. Plumb: The effect of a Hadley circulation on the propagation and reflection of planetary waves in a simple one–layer model, J. Atmos. Sci., 57, 1536–1556.

Ford, R., M. E. McIntyre, and W. A. Norton, 2000: Balance and the Slow Quasimanifold: Some Explicit Results. J. Atmos. Sci., 57, 1236–1254.

Greenslade, M. D., 2000: Drag on a sphere moving horizontally in a stratified fluid, J. Fluid Mech., 418, 339–350

Haßler, B. and M. E. McIntyre, 2000: On the Robustness of the Brewer–Dobson Circulation in the Tropical Stratosphere. In: Proceedings of the European Geophysical Society General Assembly XXV, Nice.

Haßler, B. and M. E. McIntyre: On the Robustness of the Brewer–Dobson Circulation in the Tropical Stratosphere. Abstract number 172 in: Proceedings of the Meteorology at the Millennium 150th Anniversary Conference of the Royal Meteorological Society, St. John's College, Cambridge, UK

Haynes, P. H. and E. F. Shuckburgh, 2000: Effective Diffusivity as a diagnostic of atmospheric transport. 1: Stratosphere, J. Geophys. Res., 105, 22777–22794.

Haynes, P. H. and E. F. Shuckburgh, 2000: Effective Diffusivity as a diagnostic of atmospheric transport. 2: troposphere and lower stratosphere, J. Geophys. Res., 105, 22795–22810.

McIntyre, M. E. and W. A. Norton, 2000: Potential vorticity inversion on a hemisphere, J. Atmos. Sci., 57, 1214–1235.

Mohebalhojeh, A. R. and D. G. Dritschel, 2000: On the representation of gravity waves in numerical models of the shallow water equations, Q. J. Roy. Meteorol. Soc., 126, 669–688.

Neufeld, Z., C. Lopez, E. Hernandez–Garcia, and T. Tél, 2000: Multifractal structure of chaotically advected chemical fields, Phys. Rev. E., 61, 3857–3866.

Neufeld, Z., P. H. Haynes, and G. Picard, 2000: The effect of forcing on the spatial structure and spectra of chaotically advected passive scalars, Phys. Fluids, 12, 2506.

Scott, R. K. and P. H. Haynes, 2000: Internal vacillations in stratosphere–only models, J. Atmos. Sci., 57, 3233–3250.

Vanneste J. and P. H. Haynes, 2000: Intermittent mixing in strongly stratified fluids as a random walk, J. Fluid Mech., 411 , 165–185.